1 Getting Started with Qiime2

1.1 Dive into the official Qiime2 Tutorial

For an in-depth walkthrough of microbiome analysis using the Qiime2 pipeline, explore the official tutorial accessible at https://docs.qiime2.org/2024.2/tutorials/. This comprehensive guide offers a step-by-step approach to leverage Qiime2 for processing and analyzing microbiome data. Covering crucial aspects like data importing, quality control, diversity analysis, and result visualization, this tutorial enhances your proficiency in utilizing Qiime2 functionalities. Following this resource ensures a thorough understanding and empowers you to conduct robust and reproducible microbiome analyses.

1.2 Installing Qiime2 using a bash script

conda update conda

conda install wget