Skip to main content

IMAP: Integrated Microbiome Analysis Pipelines: End-to-End Practical User Guides Using Integrated Approaches

2 Import or Download Demo Data

Demo data from one of the QIIME2[1] tutorials.

mkdir -p resources
mkdir -p resources/reads
mkdir -p resources/references

cd mkdir -p resources/reads

wget \
  -O "sample-metadata.tsv" \
  "https://data.qiime2.org/2024.2/tutorials/atacama-soils/sample_metadata.tsv"

wget \
  -O "emp-paired-end-sequences/forward.fastq.gz" \
  "https://data.qiime2.org/2024.2/tutorials/atacama-soils/10p/forward.fastq.gz"

wget \
  -O "emp-paired-end-sequences/reverse.fastq.gz" \
  "https://data.qiime2.org/2024.2/tutorials/atacama-soils/10p/reverse.fastq.gz"

wget \
  -O "emp-paired-end-sequences/barcodes.fastq.gz" \
  "https://data.qiime2.org/2024.2/tutorials/atacama-soils/10p/barcodes.fastq.gz"